old experiments

flash on the chipseq data from Kevin

Click on this three data sets on the 4500 rows chr1 var_col to see more details.

ns

Click on this load reslut of GTEx data to see more details.

Click on this pairwise plot to see more details.

Issues

Click on this gap issue to see more details. (test)

Click on this summary of the rank0 vs rank1 to see a simple summary to the following two items.

• Click on this rank 0 vs rank 1 to see more details.
• Click on this rank 0 vs rank 1: fdr with penalty to see more details.

flashr2

This is a simple test first try

Initialization issue: softimpute as initialization

Click here to find the null check for flashr2 and densen nu case

Session information

sessionInfo()

R version 3.3.0 (2016-05-03)
Platform: x86_64-apple-darwin13.4.0 (64-bit)
Running under: OS X 10.13.2 (unknown)

locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] softImpute_1.4  Matrix_1.2-11   R.matlab_3.6.1  MASS_7.3-47    
[5] workflowr_0.4.0 rmarkdown_1.6   ggplot2_2.2.1  

loaded via a namespace (and not attached):
 [1] Rcpp_0.12.14      rstudioapi_0.6    flashr2_0.4-0    
 [4] knitr_1.18        magrittr_1.5      munsell_0.4.3    
 [7] lattice_0.20-35   colorspace_1.3-2  rlang_0.1.6      
[10] stringr_1.2.0     plyr_1.8.4        tools_3.3.0      
[13] grid_3.3.0        gtable_0.2.0      R.oo_1.21.0      
[16] PMA_1.0.9         git2r_0.19.0      htmltools_0.3.6  
[19] yaml_2.1.16       lazyeval_0.2.0    digest_0.6.13    
[22] rprojroot_1.2     tibble_1.3.4      gridExtra_2.3    
[25] R.utils_2.5.0     ssvd_1.0          evaluate_0.10.1  
[28] labeling_0.3      stringi_1.1.6     R.methodsS3_1.7.1
[31] scales_0.4.1      backports_1.1.2